Yes, updated IQA and cleared adaptations. I had returned to stock before tearing into it. Reprogrammed with tuner, after IQA and adaptations. Found that I had to change the aftermarket tune from the one it was on, as it seems that it may have had some adaptive strategies learned for the tune. Because when I swapped it to one of the other available tunes, it ran great. Thanks for the suggestions guys, that one just threw me for a loop.